The incanter doc for $map shows that you can pass vector of column to $map and hence your code becomes:
($map (fn [f1 f2] (do-something-with f1 f2) [:fq1 :fq2] freqs)
NOTE: As you are mapping over 2 columns, the function should take 2 params,also the wrong number of params is not because of the way you called $map, but rather your passed function is only taking one param.