Unfortunately, you probably can't. I don't know what engine Flex wraps in it's web controllers, but the reason you are bumping in to this is security.
It's in place for good reason, it's to prevent JS from having direct access to your file system.
I would suggest one of two workarounds.
Bundle a simple webserver. For example https://stackoverflow.com/questions/530787/simple-http-web-server
Modify the AngularJS App (and possibly $routeProvider) to use the new File API
It's a bit of a hassel but copy all the contents of your template in to the main file in
<script type="text/ng-template" id="some-id"></script>