I fully removed cloud9 and node(followed these directions to remove node: Uninstall Node.JS using Linux command line?), and then did a clean install following these directions: http://www.raspberrypi.org/phpBB3/viewtopic.php?f=63&t=30265. In addition to those commands I also had to run the following:
sudo npm install formidable
sudo npm install gnu-tools
sudo npm install xmldom
after that I was able to start the cloud9 server without issue, and now I'm able to save files.
thanks for trying to help