There's a module called mod_dir that's automatically loaded and it causes requests for directories that are missing the trailing slash to get redirected with a trailing slash. You can turn this off using the DirectorySlash
directive, but note the security warning when you turn it off. There's an information disclosure security issue if you turn it off and default indexes won't get loaded. However, your lats rule (looks like) it does that, though incorrectly.
First, turn off the DirectorySlash
DirectorySlash Off
Then you need to change the last rule to:
RewriteCond %{REQUEST_FILENAME} -d
RewriteCond %{REQUEST_FILENAME}/index.php -f
RewriteRule ^(.*)$ /$1/index.php [L]