What I ended up doing is simply install all packages and then remove the ones with an old build. I.e.
sudo add-apt-repository ppa:marutter/c2d4u -y
sudo add-apt-repository ppa:marutter/rrutter -y
sudo apt-get update
sudo apt-get install r-bioc-*
sudo apt-get install r-cran-
And then in R:
which(installed.packages()[,"Built"] < 3.0)