I'm working on a document in R, with knitr to pdflatex and am using the extended version of toLatex
from memisc.
When I'm producing a table with cut intervals however, the square brackets are not sanitised and the pdflatex job errors because of the existence of [
.
I tried putting sanitize=TRUE
in the knitr chunk code, but this only works for tikz.
Previously, I have used gsub and replaced the string in the R object itself which is rather inelegant. I'm hoping someone could point me in the direction of a nuance of memisc or knitr that I'm missing or another function/method that would easily handle latex special characters.
Example
library("memisc")
library("Hmisc")
example<-data.frame(cbind(x=1:100,y=1:100))
example$x<-cut2(example$x,m=20)
toLatex(example)
UPDATE
Searching SO I found a post about applying latexTranslate with apply function, but this requires characters so I would have to unclass from factor to character.
I found another SO post that identifies the knitr:::escape_latex
function however, the chunk then outputs the stuff as markup instead of translating it (using results='asis') or produces an R style table inside a code block (using results='markup'). I tried configuring it as a hook function in my parent document and it had the effect of outputting all the document contents as markup. This is a brand new area for me so I probably implemented it incorrectly.
<<setup,include=FALSE>>=
hook_inline = knit_hooks$get('inline')
knit_hooks$set(inline = function(x) {
if (is.character(x)) x = knitr:::escape_latex(x)
hook_inline(x)
})
@
...
<<tab-example,echo=FALSE,cache=TRUE,results='asis',sanitize=TRUE,inline=TRUE>>=
library("Hmisc")
library("memisc")
example<-data.frame(cbind(x=1:100,y=1:100))
example$x<-cut2(example$x,m=20)
toLatex(example)
@
According to @yihui this is the wrong way to go
UPDATE 2
I have created a gsub wrapper which will escape percentages etc, however the [ symbol still pushes latex into maths mode and errors.