Pregunta

from patsy import *
from pandas import *
dta =  DataFrame([["lo", 1],["hi", 2.4],["lo", 1.2],["lo", 1.4],["very_high",1.8]], columns=["carbs", "score"])
dmatrix("carbs + score", dta)
DesignMatrix with shape (5, 4)
Intercept  carbs[T.lo]  carbs[T.very_high]  score
        1            1                   0    1.0
        1            0                   0    2.4
        1            1                   0    1.2
        1            1                   0    1.4
        1            0                   1    1.8
Terms:
'Intercept' (column 0), 'carbs' (columns 1:3), 'score' (column 3)

Question : instead of specifying "names" of the columns using Designinfo (which basically makes my code less re-usable) , can I not READ the names given by this DesignMatrix so that I can feed this into a DataFrame later, without needing to know pre-hand what the "reference level/control group" level was ?

ie. When I do dmatrix("C(carbs, Treatment(reference='lo')) + score", dta)

"""
# How can I get something like this with dmatrix's output without hardcoding ?
names = obtained from dmatrix's output above 
This should give names = ['Intercept' ,'carbs[T.lo]', 'carbs[T.very_high]', 'score']
"""
g=DataFrame(dmatrix("carbs + score", dta),columns=names)

    Intercept  carbs[T.lo]  carbs[T.very_high]  score
   0  1  2    3
0  1  1  0  1.0
1  1  0  0  2.4
2  1  1  0  1.2
3  1  1  0  1.4
4  1  0  1  1.8

type(g)=<class 'pandas.core.frame.DataFrame'>

so g would be the transformed dataframe I can do logistic modelling on without needing to keep a note of (or hard-coding thereof) of the column names & their reference levels.

¿Fue útil?

Solución

I think the information you're looking for is in design_info.column_names:

>>> dm = dmatrix("carbs + score", dta)
>>> dm.design_info
DesignInfo(['Intercept', 'carbs[T.lo]', 'carbs[T.very_high]', 'score'],
           term_slices=OrderedDict([(Term([]), slice(0, 1, None)), (Term([EvalFactor('carbs')]), slice(1, 3, None)), (Term([EvalFactor('score')]), slice(3, 4, None))]),
           builder=<patsy.build.DesignMatrixBuilder at 0xb03f8cc>)
>>> dm.design_info.column_names
['Intercept', 'carbs[T.lo]', 'carbs[T.very_high]', 'score']

and so

>>> DataFrame(dm, columns=dm.design_info.column_names)
   Intercept  carbs[T.lo]  carbs[T.very_high]  score
0          1            1                   0    1.0
1          1            0                   0    2.4
2          1            1                   0    1.2
3          1            1                   0    1.4
4          1            0                   1    1.8

[5 rows x 4 columns]
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