Altitude is automatically taken into the calculation of the augmentation. There are a few things you should consider. Altitude information is only used when the accuracy of the GPS is high enough. This guarantees that the altitude will be reasonable accurate. However GPS altitude information has never the highest accuracy and you might see differences for POIs close to the user.
If you know the altitude more accurate then GPS, e.g. for predefined places you can use the injectLocation methods to set the altitude.