(Spyder dev here) This is a bug in Spyder. We are not adding the project's path to PYTHONPATH and that's why you can't import your project in the console after you open it. I created an issue for you and we'll fix it in our next major release (i.e 2.3).
A workaround for now (as it was mentioned by @Jblasco) is to use our PYTHONPATH manager to add the project's path by yourself. After doing it, you need to open a new console so that changes can take effect.