JGraphX was a completely rewrite from scratch, which is why we didn't call it JGraph 6 and the versioning started from 1.0.
JGraphX does have tree/hierarchical layouts in it.
Obviously, JGraphT is not a related project to us, so it's unfortunate they didn't update. There is a post on our forum relating to this. I haven't tested the bridge, but the idea is right.
JGraphX does have its own analysis package too, btw. You might want to check whether that meets your needs and whether you need JGraphT at all.
We do provide downloads of the later version of JGraph 5 here.