You are correct: you won't be able to simply replace CreateThread with a new call. You will have to port your threading code to the new APIs.
From my experience, the link Raman Sharma's posted is a great reference if you wish to port your code more easily to the WinRT ThreadPool model. I have successfully used the shim found there to implement a Win32 thread emulation layer that my older Win32-dependent code can interact with.