Yes.
However to work correctly with browserify libraries need to be done browserify style. The good news it's not hard to convert, for most libraries it's mostly just a matter of getting their module.exports
set up instead of exporting to window
. And for many modules you don't need to do it your self since they're already published in browserify style on npm. jQuery and three are in npm ready for browserify use.
Take a look here so see an example conversion: https://github.com/spine/jqueryify/blob/master/index.js#L8730-L8757