The problem isn't a Codeigniter problem, it's a javascript scope/file inclusion/where-do-i-get-my-data-from problem.
I run into this all the time and have used these solutions:
- naming my php files with .php extensions and loading them as if they're views.
- Just putting the script that needs data from a view IN the view file where it's used
- Using an ajax request in my included js file to hit a controller and get json data.
I use #2 most frequently (for things like datatables where I WANT the js code right there next to the table it's referencing.
I use #1 occasionally, but try NOT to do that because it means some .js files are in my webroot/js dir and some are in teh application/views directory, making it confusing for me or anyone else who wants to support this project.
#3 is sometimes necessary...but I like to avoid that approach to minimize the number of requests being made and to try to eliminate totally superfluous requests (which that is).