The best plotting package is, by far, pyplot. It is essentialy a port of the matlab plotting system to python, but it works better than the original. Install numpy & matplotlib and look at the simple plotting tutorials. Plotting would be something like:
import matplotlib.pyplot as plt;
plt.plot(X, Y, color);
plt.show();
where X and Y are 1D arrays of the corresponding x, y values. The answer can't be more specific, since you don't give details about how the variables are stored.