Use a stylesheet with the identity transformation template
<xsl:template match="@* | node()">
<xsl:copy>
<xsl:apply-templates select="@* | node()"/>
</xsl:copy>
</xsl:template>
and the template <xsl:template match="Catalog[Book-1]/Book-2"/>
.
Based on your provided XML sample a complete XSLT stylesheet is
<xsl:stylesheet xmlns:xsl="http://www.w3.org/1999/XSL/Transform" version="1.0">
<xsl:template match="@* | node()">
<xsl:copy>
<xsl:apply-templates select="@* | node()"/>
</xsl:copy>
</xsl:template>
<xsl:template match="Catalog[book1]/book2"/>
</xsl:stylesheet>
which transforms
<Catalog>
<book1>Wise Otherwise</book1>
<book2>Great Expectations</book2>
</Catalog>
into
<Catalog>
<book1>Wise Otherwise</book1>
</Catalog>