You need to "SMOTE" your data. First figure out how many more instances of the minority case you need. In my case I wanted to get around a 50/50 ratio so I needed to over sample by 1300 percent. This tutorial will help if you are using the GUI: http://www.youtube.com/watch?v=w14ha2Fmg6U If you are doing this from the command line using Weka, the following command will get you going:
#Weka 3.7.7
java weka.Run -no-scan weka.filters.supervised.instance.SMOTE \
-c last -K 25 -P 1300.0 -S 1 -i input.arff -o output.arff
The -K option is the number of neighbors to take into account when smoting the data. The default is 5, but 25 worked best for my dataset.