As mentioned in the other answers, this happens if an ajax request is still being processed or if an ajax event is triggered prior to the actual click on the submitting commandLink or commandButton (for instance by a change event on an input field).
Therfore it is not possible to avoid BusyConversationExceptions with onclick="preventEventPropagation(event)";
, since the AJAX events are not triggered via propagation.
The issue can easily be avoided by listening for running ajax requests and blocking submits until the pending ajax events have been completed.
The issue and solution are explained in more detail in this blog post JSF2 AJAX/Submit conversation issue.