I have submitted a similar article with weka about resource consumption. Weka is a normal java tool therefore it does not supply any tool for your purposes but you can use normal Java and operating system tools.
Both of these google searches gives you Visual VM. You can use it to profile your weka program, actually your java code. Also operating system tools gives you another approach like windows performance monitor. Similar tools exists for Smart Phones like , Android profiling, IOS Instruments
Of course also a lot of different commercial tools exists.
At the bottom line, do not expect any tool like weka or Rapid Miner to bring such tools, even if they do, they would be exception and supported features would be less than any generic tool like visual vm.