It sounds like you need to install your certificate chain. Comodo (and most other CA's) will have a chain that must be followed by the browser. In your cert file just add the intermediate and root ca certs in addition to your actual cert. My file looks like this:
-----BEGIN MY CERTIFICATE-----
-----END MY CERTIFICATE-----
-----BEGIN INTERMEDIATE CERTIFICATE-----
-----END INTERMEDIATE CERTIFICATE-----
-----BEGIN INTERMEDIATE CERTIFICATE-----
-----END INTERMEDIATE CERTIFICATE-----
-----BEGIN ROOT CERTIFICATE-----
-----END ROOT CERTIFICATE-----
-----BEGIN RSA PRIVATE KEY-----
-----END RSA PRIVATE KEY-----