Jennifer you should consider checking out http://salesforce.stackexchange.com for more specific Salesforce.com questions.
There is unfortunately not a way to deploy a trigger (assuming your going from a Sandbox -> Production org) without switching off the scheduled jobs.
Salesforce unfortunately makes this very difficult. You need to build a scheduler for your jobs that allows you to deactivate them and reactivate them after making this modification to your org if it's causing problems and blocking you from deploying a component.
Either that, or write your triggers in such a way that they can work around the conflicting classes that are being invoked.