Pablo's answer is essentially correct, but there are two small bits (no pun intended!) that may help you see what's going on.
C (like pretty much every other language) uses what's called two's complement, which is simply a different way of representing negative numbers (it's used to avoid the problems that come up with other ways of handling negative numbers in binary with a fixed number of digits). There is a conversion process to turn a positive number in two's complement (which looks just like any other number in binary - except that the furthest most left bit must be 0 in a positive number; it's basically the sign place-holder) is reasonably simple computationally:
Take your number
00000000 01101101 (It has 0s padding it to the left because it's 16 bits. If it was long, it'd be padded with more zeros, etc.)
Flip the bits
11111111 10010010
Add one.
11111111 10010011.
This is the two's complement number that Pablo was referring to. It's how C holds -109, bitwise.
When you logically shift it to the right by five bits you would APPEAR to get
00000111 11111100.
This number is most definitely not -4. (It doesn't have a 1 in the first bit, so it's not negative, and it's way too large to be 4 in magnitude.) Why is C giving you negative 4 then?
The reason is basically that the ISO implementation for C doesn't specify how a given compiler needs to treat bit-shifting in negative numbers. GCC does what's called sign extension: the idea is to basically pad the left bits with 1s (if the initial number was negative before shifting), or 0s (if the initial number was positive before shifting).
So instead of the 5 zeros that happened in the above bit-shift, you instead get:
11111111 11111100. That number is in fact negative 4! (Which is what you were consistently getting as a result.)
To see that that is in fact -4, you can just convert it back to a positive number using the two's complement method again:
00000000 00000011 (bits flipped)
00000000 00000100 (add one).
That's four alright, so your original number (11111111 11111100) was -4.