Find sequences that does not match to a target sequence [closed]

StackOverflow https://stackoverflow.com/questions/20207610

문제

An interesting question by Rnaer from Biostar:

I want to find unique dna/protein sequences of a given length (30nt, for example) that does not match to any region of the C.elegans genome. Is there any tool to do that?

도움이 되었습니까?

해결책

NCBI provides an easy way to search DNA/Amino acid sequence databases that DO NOT match to a target organisms genome, yet match to other databases and sources.

Just use the exclude field in NCBI's BLASTn

enter image description here

Hope this was useful.

라이센스 : CC-BY-SA ~와 함께 속성
제휴하지 않습니다 StackOverflow
scroll top